PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493518.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 727aa    MW: 79823.1 Da    PI: 6.6551
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_004493518.1 306 PCPDFRK-GACRRGDMCEYAHG 326
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.0E-1338184IPR020683Ankyrin repeat-containing domain
SMARTSM0024816004070IPR002110Ankyrin repeat
SuperFamilySSF484032.8E-1241175IPR020683Ankyrin repeat-containing domain
CDDcd002041.93E-945176No hitNo description
PROSITE profilePS5029711.42687176IPR020683Ankyrin repeat-containing domain
SMARTSM002480.05987115IPR002110Ankyrin repeat
SMARTSM00248660122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4305328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035643336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MCCELEGLKP APSPSLSPIL TRTSQLSNHT MNHLTVGTED SFASLLELAA NNDVEGFKRL  60
IEYDPSSVDE VGLWYGRRKG SKKMVNEQRT PLMVAATYGS IDIMKMIISL SDVHINRPCG  120
LDKSTALXXX XXXXAENAVV AVKLLLAAGA DPNAVDANGH RPLDVIVFPP KLEFVKNSLE  180
ELLQTDDPSA GCNLRVITTS FNTYSPPLSA SPENGSPSPP DLLLKLKSID VPISPAASEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKY  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE  360
ELRPLYVSTG SAVPSPRSST SSAMDFAAAM SMLPGSPSSM SVMSPSPFTP PMSPSGNGIS  420
HSSVAWPQPN IPALHLPGSN LQSSRLRSSL NARDIHMDDF DLLSDYDQQQ QLINELSCLS  480
PHTMNSNSLS RSGRMKPLTP SNLDDLFSAE SSSPRYADPV FSPTHKSAVF NQFQQQQNML  540
APVNTNFSSK NVEHHLLQAA SFGVQPSGRM SPRNVEPISP MSSRMSMLAQ REKHQQFRSL  600
SFREHGSNSM AAAATGAVNS WSKWESPNGK LDWAHNADEV GKLRRSSSFE LGNNGEEPDL  660
SWVQSLVKES PTEIKEKLAT SISGVTPAGS SGEGSNMSTQ MESVDHAAVL GTWLEQIQLD  720
HLVAQQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558850.0AC155885.2 Medicago truncatula chromosome 7 clone mth2-10p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493518.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA2Q3L50.0A2Q3L5_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGGLYMA10G21950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain